CDS
| Accession Number | TCMCG025C02166 |
| gbkey | CDS |
| Protein Id | XP_021681833.1 |
| Location | complement(join(1650593..1650661,1652214..1652268,1653244..1653290,1653408..1653464,1653577..1653691,1654258..1654339,1654476..1654560,1654637..1654756,1654992..1655042,1655177..1655242,1655381..1655428,1655514..1655562,1655683..1655736,1655881..1655940,1656080..1656138,1656264..1656380,1656472..1656483)) |
| Gene | LOC110665844 |
| GeneID | 110665844 |
| Organism | Hevea brasiliensis |
Protein
| Length | 381aa |
| Molecule type | protein |
| Topology | linear |
| Data_file_division | PLN |
| dblink | BioProject:PRJNA394253 |
| db_source | XM_021826141.1 |
| Definition | flap endonuclease 1-like isoform X1 [Hevea brasiliensis] |
EGGNOG-MAPPER Annotation
| COG_category | L |
| Description | Structure-specific nuclease with 5'-flap endonuclease and 5'-3' exonuclease activities involved in DNA replication and repair. During DNA replication, cleaves the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. It enters the flap from the 5'-end and then tracks to cleave the flap base, leaving a nick for ligation. Also involved in the long patch base excision repair (LP-BER) pathway, by cleaving within the apurinic apyrimidinic (AP) site-terminated flap. Acts as a genome stabilization factor that prevents flaps from equilibrating into structurs that lead to duplications and deletions. Also possesses 5'-3' exonuclease activity on nicked or gapped double- stranded DNA, and exhibits RNase H activity. Also involved in replication and repair of rDNA and in repairing mitochondrial DNA |
| KEGG_TC | - |
| KEGG_Module | - |
| KEGG_Reaction | - |
| KEGG_rclass | - |
| BRITE |
ko00000
[VIEW IN KEGG] ko00001 [VIEW IN KEGG] ko01000 [VIEW IN KEGG] ko03032 [VIEW IN KEGG] ko03400 [VIEW IN KEGG] ko04147 [VIEW IN KEGG] |
| KEGG_ko |
ko:K04799
[VIEW IN KEGG] |
| EC | - |
| KEGG_Pathway |
ko03030
[VIEW IN KEGG] ko03410 [VIEW IN KEGG] ko03450 [VIEW IN KEGG] map03030 [VIEW IN KEGG] map03410 [VIEW IN KEGG] map03450 [VIEW IN KEGG] |
| GOs | - |
Sequence
| CDS: ATGGGCATTAAGGGTTTAACGAAGCTGTTGGCGGATAATGCCCCGAAAGCTATGAAAGAGCAGAAATTTGAGAGCTACTTTGGCCGCAAGATTGCCATTGATGCCAGCATGAGCATCTACCAGTTCCTTATTGTAGTGGGAAGAATTGGAACTGAAATGCTTACTAATGAGGCTGGCGAAGTCACTAGCCATTTGCAAGGCATGTTTACTCGGACAATCAGGCTTCTTGAGGCTGGAATAAAGCCTGTTTATGTGTTTGATGGGCAGCCTCCAGACTTGAAAAAAGAAGAGCTGGCAAAGCGTTACTCAAGAAGGGCAGATGCTACTGAGGATCTGGCTCAAGCTGTGGAGACTGGCAACAAGGAAGACATTGAGAAATTCAGTAAGCGGACAGTGAAGGTAACAAAGCAGCACAATGAAGACTGCAAAAGACTTTTAAAACTCATGGGAGTACCTGTAATTGAGGCTCCTTCGGAAGCAGAGGCAGAGTGTGCTGCACTTTGCAAATCAGGAAAGGTTTATGCTGTAGCTTCTGAGGACATGGATTCCTTAACTTTTGGAGCTCCTAGGTTTCTTCGCCACTTGATGGATCCCAGCTCAAAAAAAATCCCGGTTATGGAATTTGAAGTCTCAAAGATTTTGGAGGAATTGAACCTTACCATGGATCAATTCATCGATCTGTGTATCCTTTCTGGATGTGATTATTGTGACAGCATTCGAGGAATTGGAGGGCAGACTGCCTTGAAGCTCATCCGTCAGCATGGATCTATAGAGAACATATTGGAGAACATAAACAAAGAGAGATACCAAATACCAGAGGATTGGCCATATCAGGAGGCTCGACAGCTTTTTAAAAAACCAATTGTCCTTGCTGATGAAGAGGAGCCTGAGCTTAAGTGGATTGCCTCAGATGAAGAGGGGCTGATTACTTTCTTGGTGAATGAAAATGGGTTCAATAGTGATCGGGTGACAAAGGCAATAGAAAAAATTAAAGCAGCTAAGAACAAGTTATCACAAGGCCGATTGGAATCATTTTTTAAGCCAGTTGCCAACTCATCTATGCCTATTAAACGGAAGGAAACGCCGAATATCAATGCTAAAGAAACTAGTGCTAAGAAGTCCAGGGCCAAAGGTGGTAAGAAGTAG |
| Protein: MGIKGLTKLLADNAPKAMKEQKFESYFGRKIAIDASMSIYQFLIVVGRIGTEMLTNEAGEVTSHLQGMFTRTIRLLEAGIKPVYVFDGQPPDLKKEELAKRYSRRADATEDLAQAVETGNKEDIEKFSKRTVKVTKQHNEDCKRLLKLMGVPVIEAPSEAEAECAALCKSGKVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVSKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQEARQLFKKPIVLADEEEPELKWIASDEEGLITFLVNENGFNSDRVTKAIEKIKAAKNKLSQGRLESFFKPVANSSMPIKRKETPNINAKETSAKKSRAKGGKK |